Motagua and Marathon have played 3 finals. Two won by Marathón and one by Motagua.
2001–02 Apertura
Motagua 3–3 Marathón on aggregate; Motagua won 5–3 on penalty shootouts.
2002–03 Clausura
Marathón won 4–1 on aggregate.
2007–08 Apertura
Marathón won 2–0 on aggregate.
Trivia
First game in Liga Nacional: Marathón 2–0 Motagua in San Pedro Sula with two goals from Mario Rivera and Rafael Maldonado on 1 August 1965.
First game in Tegucigalpa: on 21 November 1965 ended in a 4–1 victory for Motagua and the scorer were 2 from Jorge Berrios, Amado Castillo and Hector Chavez. The goal from Marathon was from Mauro "Nayo" Caballero.
First Motagua's victory in San Pedro Sula:1967, Marathón 1–2 Motagua with a double from Roberto Abrusezze, Mauro Caballero scored for the greens.
Oscar "Martillo" Hernández: scored 13 goals against Marathón.